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Dog Microsatellite Locations
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Genes & Diseases

Cat BAC Clone Locations

Dog BAC Clone Locations

 

The list below (Table 1) provides the location of domestic dog microsatellites that have been identified within 5 kb of the gene of interest.  The locations corresponds to the nucleotide position the genome seqeunce of the dog.  These postions can be located at ENSEMBL or the UC Santa Criz browser.    The microsatellies were selected as perfect dinucleotide repeats with a minimum repeat of 18 dinucleotide pairs.  Primers are now being developed for these microsatellites and they will be tested for polymorphism and genotype in the dog reference families.  The Lyons' Laboratory will assist the development of new markers near genes of interest for investigators interested in developing canine models for human disease.  Contact the Lyons Laboratory at: felinegenome@ucdavis.edu

This work is supported by funding granted by NIH-NCRR 1 R24 RR16094

Table 1.  Locations of Dog Gene-Associated Microsatellites

Gene Symbol Dog Chr Forward Primer Reverse Primer

Nucleotide Position

ABCA4 chr6     56687714
ABCC6 chr6     29420860
ABCD2 chr27     16976595
ACATE2 chrX     19309824
aco2 chr10     26952740
acr chr10     19751590
ACTC chr30     5410408
AGC1 chr3     54934799
AGRP chr5     85014641
AGTR1 chr23     46666481
AICDA chr27     40054587
AIPL1 chr5     33800619
AKAP10 chr5     43277776
ALMS1 chr17     52215517
AMACR chr4     76990781
AMH chr20     59809821
AMHR2 chr27     4805127
APC chr3     3094579
AQP2 chr27     7750341
ARSA chr10     19830206
ATP6V0A4 chr16     15656166
ATP6v1B1 chr10     72648558
ATXN7 chr20     30167616
AVP chr24     21200233
AVPR2 chrX     124809269
B3GAT1 chr5     3703910
BBS5 chr36     17345872
BCOR chrX     34445338
BGN chrX     124388537
BMP1 chr25     38091873
BMP10 chr10     71101338
BMP15 chrX     43587538
BMP2 chr24     18229507
BMP3 chr32     8187160
BMP4 chr8     32897857
BMP5 chr12     26064448
BMP6 chr35     10700326
BMS1L chr28     7229302
BRCA1 chr9     12634114
BRCA1 chr9     12668029
BRCA2 chr25     10731711
CA2 chr29     34991681
CACNA1B chr9     40530953
CACNA1F chrX     42138767
CACNB4 chr19     56223875
CAV3 chr20     12232599
CCNB1IP1 chr15     20674540
CD3E chr5     18377551
CDH23 chr4     25483304
CDH3 chr5     84000220
CDK4 chr10     4876690
cecr6 chr27     47839035
CENTA1 chrUn     2058600
CHAT chr28     4497058
CHL1 chr20     19827767
CHM chrX     69736688
CHN2 chr14     44778626
CHRNA2 chr25     33155576
CHRNB1 chr5     35342616
CHRNE chr5     34680564
CHRNG chr25     47232731
CIAS1 chr8     3228415
CKM chr1     112448442
CLCN1 chr16     12090820
CNGA1 chr13     46954183
CNGA3 chr10     47490372
CNGB1 chr2     59255088
CNGB3 chr29     35781431
COL11A1 chr6     49025325
COL1A1 chr9     18861213
COL1A2 chr14     22431680
COL2A1 chr27     9789231
COL6A3 chr25     51078682
COX10 chr5     40851194
CPGL2 chr1     7764732
CRB1 chr7     8088736
CREM chr2     4781326
CRFG chr2     34547300
CRX chr1     110486880
CRYAA chr31     39602753
CRYBA1 chr9     35977852
CRYBB3 chr26     22420857
CRYGB chr37     19414178
CRYGD chr37     19398013
CYLD chr2     65268306
CYP1B1 chr17     33131346
CYP2E1 chrUn     8249660
DCT chr22     48254468
ddt chr26     30562289
DLK1 chr8     71888964
DMD chrX     26402338
DMPK chr1     112068017
DNAI1 chr11     52521075
DNMT3B chr24     25031482
DTNA chr7     57770524
DTNB chr17     22779816
DUSP22 chr35     3671863
DYSF chr17     53860709
ED1 chrX     56958743
EDAR chr10     38163869
EDN3 chr24     46981906
EDNRB chr22     34354555
EFEMP1 chr10     60070364
EGF chr32     33114602
egfr chr18     8775006
ELOVL4 chr12     43806893
EPHA3 chr33     3787037
ERCC6 chr28     4391497
EXT1 chr13     20297242
EXT2 chr18     55454188
FAT chr16     45836512
FBXO25 chr25     40516589
FCMD chr11     62811420
FGA chr15     55270047
FGF1 chr2     38105923
FGF2 chr19     20475302
FGFr1 chr16     28899757
FGFr2 chr28     34086989
FGFR3 chr3     65286324
FGFr4 chr4     39454838
FKRP chr1     111399327
FLNC chr14     10347314
FLT1 chr25     14376758
FMR1 chrX     119327186
FOS chr8     51245364
FOXD3 chr5     49873450
FZD4 chr21     15716691
G6PD chrX     125277788
GAA chr18     29162736
GAB2 chr21     23611933
GALC chr8     62203297
galgt2 chr9     17990223
GAS8 chr5     66664799
GATA3 chr2     28673254
GBAS chr6     3202848
GBE1 chr31     8973873
GCK chr16     3195227
gdap1l1 chr24     34729819
GDF2 chr4     38193948
GDF5 chr24     27325669
GDF8 chr37     3694985
GFRA1 chr28     29824854
GFRA2 chr25     38527875
GJA8 chr17     61114373
GJB6 chr25     20909613
GLB1 chr23     6795048
GLI3 chr18     10915921
GMIP chr20     46500200
GNAT1 chr20     41986172
GNAT2 chr6     43817643
GOLGA3 chr26     3345805
GPM6B chrX     10141051
GPT chr13     41054062
GSN chr11     75642508
GUCA1A chr12     13722860
GUCA1B chr12     13728950
GUCY2D chr5     35824868
GUSB chr6     3466593
HES1 chrUn     30833247
HEXA chr30     38791197
hexb chr2     57850635
HEY1 chr29     30199192
HM13 chr24     23959841
HOOK3 chr16     24710007
HOXA chr14     42843933
HOXB chr9     17456625
HOXD chr36     23129542
HR chr25     38152274
HRMT1L1 chrUn     3459694
HSPG2 chr2     77983201
IDS chrX     120575710
IDUA chr3     94736525
IKBKAP chr11     65447685
IL17R chr27     47801199
IL20 chr7     8670553
IL22 chr10     13565909
IL22R chr2     76127232
IL24 chr19     15899805
Il2RA chr2     30496761
IMPDH1 chr14     10563279
INJ2 chr27     45598377
INS chr18     56680360
INSR chr20     54917968
IRF6 chr7     11052458
ITGA7 chr10     3166776
ITGB1 chr2     6749544
ITSN1 chr31     31260959
JAG1 chr24     14699117
JUN chr5     54020014
KDR chr13     50573638
KHDRBS2 chr12     28874927
KIT chr13     50247247
L1CAM chrX     124770598
lama2 chr1     70660569
lamb1 chr18     15546355
lamc1 chr7     19045339
LARGE chr10     33595140
LCK chr2     69604210
lif chr26     26533247
LMLN chr33     31792113
LPL chr25     40129569
LRAT chr15     55432568
LRP5 chr18     59853323
LYZ chr10     14421450
MAL chr17     37851342
MAOA chrX     37491536
MASS1 chr3     21002995
mb chr10     31756606
MBP chr1     5812936
MDM2 chr10     14020887
MEN1 chr18     62706764
MET chr14     58195033
MGAT1 chrUn     5723221
MIP chr10     3768149
MITF chr20     24722593
MPG chr6     41999595
MPZ chr38     21421106
MSX1 chr3     73409323
MTA1 chr8     75696541
MTP chr32     24627525
MYBPC3 chr18     52614920
MYC chr13     28257330
MYF5 chr15     26050683
MYH6 chr8     6496324
MYH7 chr8     6542207
MYL2 chr26     11801782
MYL3 chr20     44800381
MYO5A chr30     20910867
MYO7A chr21     24600052
MYOC chr7     29959418
MYT1 chr24     50620692
NDP chrX     37784461
nf2 chr26     25972730
NID chr4     7014440
NOS1 chr26     16964616
NOTCH2 chr17     59555610
NPC1 chr7     67272246
NR2E3 chr30     38332368
NRL chr8     6954469
NTRKR1 chr5     49423403
NXN chr9     37599829
NYX chrX     35679626
OAT chr28     36791650
OCIAD2 chr13     47769696
ODF3 chr18     35904491
OGG1 chr20     11330351
OPA1 chr23     55206493
OPA3 chr1     112215111
OPN1SW chr14     10417224
PARD6G chr1     3376003
PAX2 chr28     16457803
PAX3 chr37     31422515
PAX4 chr14     11262523
PAX6 chr18     46237784
PCDH15 chr26     36438521
PDCD2 chr12     75441421
PDE1C chr14     46890558
PDE4DIP chr17     59970066
PDE6A chr4     62328252
PDE6B chr3     94982326
PELO chr4     65608552
PEX1 chr14     20617197
PEX7 chr1     32339877
PFKL chr31     40471433
PFKM chr27     9631766
PGM5 chr1     91550954
pik4ca chr26     32750222
PITX1 chr11     24439560
PITX3 chr28     17775420
PKD1 chr6     40475414
PKD2 chr32     14366743
PKP2 chr27     19047754
POMT1 chr9     45195151
POMT2 chr8     53009028
POP4 chr1     124030154
PPAP2C chr20     61128455
PPARG chr20     9083707
PRIM2A chr12     27442769
PRKDC chr29     3244811
PROS1 chr33     4689828
PRPF31 chr1     105776814
PRPF8 chr9     38409736
PSPC1 chr25     21284294
pten chr26     39838142
PTH chr9     41622146
PTPN1 chr24     39909085
PXMP3 chr29     27953086
PYGB chr23     4484697
RAB38 chr21     14804004
RAGB chrX     47174648
Ramp3 chr16     3778992
RB1 chr22     5988239
RBM11 chr31     14198479
RBP4 chr28     10840422
RDH12 chr8     44600337
RDH5 chr10     3182859
RDS chr12     14243788
RET chr28     6958009
RGR chr4     35696734
RGS9 chr9     4825443
RHO chr20     8481774
RIMS1 chr12     37115107
RLBP1 chr3     55221507
ROCK1 chr7     69390091
ROM1 chr18     64390643
RP1 chr29     9146252
RP2 chrX     40309563
RPE65 chr6     78436640
RPGR chrX     32875265
RPIA chr17     40623476
RS1 chrX     14632898
RYR2 chr4     6098502
SAG chr25     47890153
SCN4A chr9     7788528
SCN8A chr27     6261458
SGCA chr9     18830500
SGCB chr13     48094930
SGCD chr4     56753613
SGCE chr14     22630118
SGCZ chr16     39427938
SH3YL1 chr17     3158494
SHB chr11     55556505
SHCBP1 chr15     11461175
SHH chr16     20508198
SILV chr10     3357106
SLC3A1 chr10     49985079
SLC9A7 chrX     40104654
SNTA1 chr8     33301294
SNTB1 chr13     22454405
SNTB2 chr5     83549614
SOD1 chr34     22437276
sox10 chr10     29866186
SOX9 chr18     22946802
SPINK5 chr2     42888813
SSPN chr27     24358948
SYNJ1 chr31     30352430
TARSL2 chr3     42351680
TBCD chrUn     6155868
TBX4 chr9     27782024
TBX5 chr26     14664621
TEAD1 chr21     38095857
TGFB1I1 chr6     19264242
TIMP3 chr10     33887190
timp3 chr10     33924035
TITF1 chr8     17957302
TNFSF5 chrX     110069774
TNNI3 chr1     105160284
TNNT2 chr7     4549568
TNSRSF6 chr26     40769481
top3a chr5     44263644
tp53 chr5     35531248
TPM1 chr30     30588142
TRC8 chr13     25623088
TRIP13 chr34     14466520
TRPM1 chr3     40829853
TTN chr36     25335619
TTPA chr29     16200839
TUBGCP5 chr3     34471350
TULP1 chr12     7557542
TYR chr21     13905039
TYRP1 chr11     34676068
UNC119 chr9     35356269
UPF3A chr22     64149247
USH1C chr21     42352067
USH1G chr18     25230319
USH3A chr23     48583688
USP14 chr7     69529282
USP9Y chrX     35428192
vegf chr12     15139541
VHL chr20     11053537
VIPR2 chr16     22779997
VMD2 chr18     64808833
VWF chr27     41947740
WFS1 chr13     41602956
WSB1 chr9     34481975
xbp1 chr26     25298397
XDH chr17     27797466

 

 

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